The Kyoto University has following agreements with African universities.
- Student Exchange Agreements
- Inter-department Student Exchange Agreements
- Academic Exchange Agreements
- Academic Exchange Agreements between Departments/Faculties
Student Exchange Agreements
Inter-department Student Exchange Agreements
- Graduate School of Engineering and Faculty of Engineering
- Egypt, American University in Cairo (Bachelor of Science / Master of Engineering and Master of Science / Applied Science, Engineering)
Academic Exchange Agreements
- Arab Republic of Egypt
- Egyptian Academy of Science, Reserch and Technology (2010)
- Egypt-Japan University of Science and Technology (E-JUST) (2012) (2017 renewed)
- The Republic of Guinea
- University of Conakry (2013)
- The Republic of the Sudan
- University of Khartoum (2001) (2007 renewed)
- Republic of Botswana
- University of Botswana (2012) (2018 renewed)
- Republic of Uganda
- Makerere University (2015)
- Democratic Republic of the Congo
- University of Kinshasa (2015)
- Kingdom of Morocco
- Mohammed V University of Rabat (2016)
- Republic of Ghana
- University of Ghana (2017)
- Federal Democratic Republic of Ethiopia
- Addis Ababa University (2017)
- United Republic of Tanzania
- Sokoine University of Agriculture (2019)
- Republic of Zambia
- University of Zambia (2019)
- Republic of Madagascar
- University of Antananarivo (2019)
Academic Exchange Agreements between Departments/Faculties
- Graduate School of Science
- Gabonese Republic Le National de la Recherche Scientifique at Technologique（2009）
- Republic of Madagascar The Faculty of Science, University of Antananarivo（2018)
- Graduate School of Engineering
- Arab Republic of Egypt The American University in Cairo（2017）
- Graduate School of Asian and African Area Studies
- Republic of Cameroon University of Yaounde I Faculty of Arts, Letters and Social Sciences（2003）
- Arab Republic of Egypt Cairo University Center for Asian Studies Faculty of Economics and Political Science（2008）
- Federal Democratic Republic of Ethiopia Addis Ababa University Institute of Ethiopian Studies（2009）
- Republic of Uganda Makerere University The College of Humanities and Social Sciences（2011）
- Republic of Ghana The Department of Geography and Regional Planning ,University of Cape Coast（2014）
- Republic of Cameroon Faculty of Agriculture, University of Dschang（2014）
- Republic of Madagascar The Faculty of Science, University of Antananarivo（2018）
- Federal Republic of Nigeria International Institute of Tropical Agriculture（2010）
- Republic of Guinea Institut de Recherche Environnementale de Bossou（2016）
- Graduate School of Informatics
- Arab Republic of Egypt Cairo University（2004）
- Graduate School of Global Environmental Studies
- United Republic of Tanzania The faculty of Agriculture, Sokoine University of Agriculture（2014）
- Republic of Cameroon Faculty of Agriculture, University of Dschang（2014）
- Faculty of Agriculture
- United Republic of Tanzania Sokoine University of Agriculture（1994）
- Disaster Prevention Research Institute
- Arab Republic of Egypt National Water Research Center Ministry of Water Resources and Irrigation（2011）（2016 Renewed)
- Arab Republic of Egypt German University in Cairo（2015）(2020 Renewed)
- Primate Research Institute
- Republic of Guinea La Direction Nationale de le Recherche Scientifique et Technique（1998）
- Democratic Republic of Congo The Research Center for Ecology and Forestry（2010）
- Democratic Republic of Congo Kinshasa University Faculty of Science（2013）
- Republic of Guinea L’Institut de Recherche Environmentale de Bossou（2016）
- Center for Southeast Asian Studies
- Arab Republic of Egypt Cairo University Center for Asian Studies Faculty of Economics and Political Science（2008）
- Wildlife Research Center of Kyoto University
- United Republic of Tanzania Tanzania Wildlife Research Institute（2013）
- Democratic Republic of the Congo Tropical Forests of UNESCO, Kinshasa University, Kinshasa, Democratic Republic of the Congo, and UNESCO Regional Post-graduate School for Integrated Management of lands（2015）
- Republic of Uganda Chimpanzee Sanctuary & Wildlife Conservation Trust（2016）
- Center for African Area Studies
- Federal Democratic Republic of Ethiopia Addis Ababa University 1988 (1992 renewed)
- Democratic Republic of Congo Centre De Recherche En Sciences Humaines 1988
- Democratic Republic of Congo Institute De Recherche En Sciences De La Sante 1988
- Democratic Republic of Congo Centre De Recherche En Sciences Naturelles 1988
- Republic of Madagascar Parc Botanique Et Zoologique De Tsimbazaza 1988
- Federal Democratic Republic of Ethiopia Addis Ababa University 2009
- Republic of Uganda Makerere University The College of Humanities and Social Sciences 2011
- Republic of Ghana The Department of Geography and Regional Planning ,University of Cape Coast 2014
- Republic of Guinea Institut de Recherche Environnementale de Bossou 2016
- Republic of Madagascar The Faculty of Science, University of Antananarivo 2018
- Republic of Zambia Institute of Economics and Social Research, University of Zambia 2018